Effect of inorganic nitrogen nutrition on cytokinin-induced potato microtuber production in vitro

Summary The effect of inorganic nitrogen nutrition on the induction and development of microtubers by cytokinin-induced tuberization was studied in four potato genotypes belonging to different maturity groups. The objective of this study was to investigate whether a reduction in total nitrogen level in the Murashige & Skoog medium would improve cytokinin-induced tuberization rate. The effect of three levels of total nitrogen (15, 30 and 45 meq) on tuberization was studied at constant (20 meq K) and varying potassium levels approximating to 5, 10 and 15 meq. Reducing the total nitrogen supply increased the number but decreased the size of nitrogen level on the rate of assimilate partitioning (harvest index) during cytokinin-induced microtuberization.     

Phenotypic and genetic parameters for body traits in the giant freshwater prawn (Macrobrachium rosenbergii) in India

Phenotypic and genetic parameters were estimated for three body traits (harvest weight, carapace length and standard length) and for adult male morphotypes of the giant freshwater prawn Macrobrachium rosenbergii in a fully pedigreed synthetic population in India. The data set included 9,173 progeny produced over four generations from 162 sires and 234 dams. Variance components and genetic parameters were estimated fitting an animal model using the residual maximum‐likelihood methodology. The heritabilities for harvest body weight (HW), carapace length (CL) and standard length (SL) were moderate (0.22 ± 0.056, 0.22 ± 0.055 and 0.25 ± 0.059 respectively). The common environmental effects for HW, CL and SL were 0.10 ± 0.020, 0.08 ± 0.018 and 0.10 ± 0.021 respectively. As M. rosenbergii is sexually dimorphic, we estimated heritabilities within each sex. Heritability of HW in females (0.27 ± 0.068) was greater than that in males (0.15 ± 0.057). CL and SL followed the same pattern. The occurrence of male morphotypes is a unique characteristic of adult populations of M. rosenbergii. Populations from culture ponds exhibit a wide range of sizes. To examine whether there was a heritable component in male morphotype frequencies, we treated male morphotypes as traits. The additive genetic variance (and hence the heritability) was zero for male morphotype, indicating that selective breeding to increase the proportion of desirable male morphotypes would not be effective. The genetic correlations among body traits were all positive, high and approaching unity. The results are discussed in relation to selection plans for the giant freshwater prawn.     

A Rapid Two-Step Bioremediation of the Anthraquinone Dye, Reactive Blue 4 by a Marine-Derived Fungus

A rapid two-step technique for bioremediation of the anthraquinone dye, the Reactive Blue 4 (RB4) by a marine-derived fungus is reported here. In the first step, 1,000?mg?l^?1 of this dye treated with partially purified laccase of this fungus resulted in 61?% color removal and twofold decrease in chemical oxygen demand by 12?h. The metabolites formed during the enzymatic degradation were characterized by mass spectrometry, ultra performance liquid chromatography, and UV/visible spectroscopy. These analyses confirmed changes in the aromatic character of the parent dye and formation of low molecular weight phenolic compounds as the final products of the enzymatic degradation. Based on these results, the probable degradation products of RB4 were 2-formylbenzoic acid, 1,2,4,5-tetrahydroxy-3-benzoic acid, 2,3,4-trihydroxybenzenesulfonic acid, and 1,2,3,4-pentahydroxybenzene. In the second step, the enzyme-transformed dye solution subjected to sorption on the powdered fungal biomass resulted in a further reduction in color up to 93?% within 10?min. Sorption of the degraded dye was confirmed by the changes in the pattern of Fourier transform infrared spectroscopy spectrum. The two-step treatment resulted in a decrease of 29?% in total carbon accompanied by twofold decrease in toxicity. This is the first report on decolorization, detoxification, and mineralization of RB4 by laccase from a marine-derived fungus.     

Genetic diversity of late blight resistant and susceptible Indian potato cultivars revealed by RAPD markers

Twenty-four tetraploid Indian potato cultivars were characterized by using RAPD markers to assess diversity within and between late blight resistant and susceptible cultivars. Sixty-four random decamer primers generated802 fragments, ranging in size from 60–3200 bp, with 96.4% fragment polymorphism. Shannon's index of diversity was used to quantify the degree of variability present within and between the variety types. Most of the diversity was detected within variety types, with 88% of variation being within and 12% being between the resistant and susceptible cultivars. No clear groupings based on late blight resistance and susceptibility or kinship was reflected on the dendogram. The late blight resistant cultivars exhibited higher variability compared to susceptible cultivars and they were more dispersed on the PCO plot. This revised version was published online in August 2006 with corrections to the Cover Date.     

Impact of alkaline particulates on pH of rain water in India

Rain water samples were collected over a period of a decade from 1974 in Pune, a city which is relatively free from industrial pollution. They were also collected at 4 places during 1974 in the region of Bombay which is highly industrialized. The samples were analyzed for major chemical components and pH. The ionic balance was computed. Samples were collected at Delhi during 1965 and 1966 and were analyzed for pH. The values were compared with those reported for 1978. The total suspended particulates (TSP) were measured at Delhi during 1980 and analyzed for water soluble components. The rain water at all the places except near the industrial source was not acidic and was characterized by the presence of excess cations, particularly Ca. The acid rain near the industrial source was associated with excess anions, especially sulphate. The difference between the cations and anions was inversely proportional to the H⁺ ion concentration. The pH of rain water at Delhi which was in the alkaline range during 1965 and 1966 remained alkaline even after a period of 12 yr when the city developed industrially. The TSP in the region was rich with the basic components, mainly Ca, suggesting that the alkaline property of the soil dust is mainly responsible for neutralizing the acidic effects resulting from the anthropogenic gaseous pollutants.     

A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome

The high degree of similarity between the mouse and human genomes is demonstrated through analysis of the sequence of mouse chromosome 16 (Mmu 16), which was obtained as part of a whole-genome shotgun assembly of the mouse genome. The mouse genome is about 10% smaller than the human genome, owing to a lower repetitive DNA content. Comparison of the structure and protein-coding potential of Mmu 16 with that of the homologous segments of the human genome identifies regions of conserved synteny with human chromosomes (Hsa) 3, 8, 12, 16, 21, and 22. Gene content and order are highly conserved between Mmu 16 and the syntenic blocks of the human genome. Of the 731 predicted genes on Mmu 16, 509 align with orthologs on the corresponding portions of the human genome, 44 are likely paralogous to these genes, and 164 genes have homologs elsewhere in the human genome; there are 14 genes for which we could find no human counterpart.     

Delineation of Inheritance Pattern of Aleurone Layer Colour Through Chemical Tests in Rice

Background

Rice aleurone layer develops different colours with various chemical tests that may help to develop some rapid tests for identification/grouping of rice varieties. Understanding the colour inheritance pattern could enable to develop chemical clues that may help for genetic purity analysis along with grow-out-test.

Results

In this study, inheritance pattern of aleurone layer colour was studied in parents, F₁ and F₂ progenies derived from the crosses IR 36 × Acc. No. 2693 and IR 64 × Acc. No. 2693. The parent IR 36 showed light yellow (NaOH/KOH) and brown (phenol/modified phenol test) colour; whereas, Acc. No. 2693 revealed wine red/dark wine red (NaOH/KOH) and light brown colour/no reaction (phenol/modified phenol test). In contrary, another parent IR 64 exhibited light yellow (KOH/NaOH) and dark brown (phenol, modified phenol) colour. Both the F₁ showed an intermediate light wine red colour (NaOH/KOH) and dark brown (phenol and modified phenol) colour, which is dominant over their one of the parents. The colour pattern with standard phenol/modified phenol, NaOH and KOH tests in F₂ progenies of both the crosses showed 9:7 (complementary gene interaction) and 11:5 ratios (reciprocal dominance modification of recessive alleles), respectively.

Conclusions

Our findings clearly elucidate the colour inheritance pattern in rice that may facilitate to develop rapid chemical tests to identify/ group the varieties for genetic purity analysis.

     

Yield characteristics and morphometric relationships of giant freshwater prawn,Macrobrachium rosenbergii (de Man, 1879)

Meat yield of 233 individuals of giant freshwater prawn, Macrobrachium rosenbergii (de Man, 1879), and their morphometric relationships were examined. Morphometric parameters of different length and weight measurements were recorded for both the sexes separately and subjected to analysis. The meat yield of prawns was size and sex dependent with females showing significantly greater (P < 0.05) tail meat yield than males. The tail meat as a body weight percentage ranges from 26.12 to 40.75 and 32.97 to 42.11 in males and females, respectively. Much of the differences in yield are related to the size and weight of the head and claws. The head weight of males was observed to be higher compared to females in all the size classes. Regression slopes of total length versus body weight and total length versus head weight were significantly higher than critical isometric value indicating high positive allometric growth in both the sexes, with males showing significantly higher (P < 0.05) slope than females. The relationship parameters of total length versus tail weight and total length versus tail meat showed a positive allometric growth in females, whereas it is isometry and negative allometry in males. The morphometric relationship of tail length versus all weight measurements showed positive allometry and negative allometry in females and males, respectively.     

A kinematic wave based watershed model for soil erosion and sediment yield

In this study, a finite element method based soil erosion and sediment yield model has been developed for overland and stream flow. The one dimensional conservation of mass of sediment flow equation has been solved based on kinematic wave flow approximation and Galerkin's based numerical solution. Various thematic maps required for the model are prepared using Geographical Information System (GIS). Land use/Land cover is extracted from remotely sensed data. The proposed finite element based distributed model has been used for the estimation of soil erosion and sediment outflow by discretizing the watershed into small grids. The soil erosion and sediment outflow model has been developed and applied to Khadakohol watershed located in Nashik district of Maharastra state, India. Part of the available data has been used for the model calibration and the other part for model validation. The simulated results of the watershed have been compared with the observed data and found to be satisfactory.     

Yield Traits and Associated Marker Segregation in Elite Introgression Lines Derived from O. sativa × O. nivara

Introgression lines(ILs)derived from interspecific crosses are a source of new genetic variability.A total of 55 ILs derived from two crosses Swarna×O.nivara IRGC81848(population A)and Swarna×O.nivara IRGC81832(population B)were characterized for yield and yield-related traits/QTLs.Segregation of 103 simple sequence repeat(SSR)markers associated with yield-related QTLs was studied.Population A showed an average of 12.6%homozygous O.nivara alleles and population B showed 10.6%.Interestingly,three SSR markers,RM223,RM128 and RM517,showed conspicuous pattern of segregation.The distribution of parental alleles at three loci RM223,RM128 and RM517 linked to yield-related traits was unique.These markers flanked to several yield-related QTLs.RM223,flanking to qyld8.3,was heterozygous in almost all the 55 ILs except in IL10-3S and IL131S.RM128 on chromosome 1 and RM517 on chromosome 3 were mutually exclusive in 46 out of 55 ILs.These 46 ILs showed either of the marker allele RM128 or RM517 from O.nivara but not both.IL166S had both RM128and RM517 from O.nivara and the other ILs showed homozygous Swarna allele at RM517 except IL65S.Population structure assigned the 55 ILs to three sub-populations based on their genomic diversity.IL65S,IL166S,IL248S,IL7K and IL250K showed high yields in multi-location trials,and IL248S was released for cultivation as DRRDhan 40.